Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PKNOX1P55347 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.18■□□□□ 0.5
PKNOX1P55347 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.18■□□□□ 0.5
PKNOX1P55347 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PKNOX1P55347 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 CKBP1-201ENST00000565489 1086 ntBASIC18.18■□□□□ 0.5
PKNOX1P55347 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 AC011298.2-201ENST00000617989 482 ntBASIC18.18■□□□□ 0.5
PKNOX1P55347 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.18■□□□□ 0.5
PKNOX1P55347 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.18■□□□□ 0.5
PKNOX1P55347 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PKNOX1P55347 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PKNOX1P55347 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PKNOX1P55347 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 RARRES2P10-201ENST00000564312 460 ntBASIC18.17■□□□□ 0.5
PKNOX1P55347 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.17■□□□□ 0.5
PKNOX1P55347 AC073195.1-201ENST00000607241 877 ntBASIC18.17■□□□□ 0.5
PKNOX1P55347 CR392000.1-201ENST00000624770 1228 ntBASIC18.17■□□□□ 0.5
PKNOX1P55347 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
PKNOX1P55347 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PKNOX1P55347 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PKNOX1P55347 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.17■□□□□ 0.5
PKNOX1P55347 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.17■□□□□ 0.5
PKNOX1P55347 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PKNOX1P55347 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
PKNOX1P55347 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 AL357033.4-201ENST00000617703 1807 ntBASIC18.16■□□□□ 0.5
PKNOX1P55347 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.16■□□□□ 0.5
PKNOX1P55347 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.16■□□□□ 0.5
PKNOX1P55347 AC139713.2-201ENST00000641328 2723 ntBASIC18.16■□□□□ 0.5
PKNOX1P55347 KRT8P45-201ENST00000414328 1447 ntBASIC18.16■□□□□ 0.5
PKNOX1P55347 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
PKNOX1P55347 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
PKNOX1P55347 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.16■□□□□ 0.5
PKNOX1P55347 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.16■□□□□ 0.5
PKNOX1P55347 AF186192.3-201ENST00000583427 947 ntBASIC18.16■□□□□ 0.5
PKNOX1P55347 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.16■□□□□ 0.5
PKNOX1P55347 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PKNOX1P55347 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PKNOX1P55347 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 AL499627.1-201ENST00000569373 2188 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.15■□□□□ 0.5
PKNOX1P55347 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms