Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CRCP-205ENST00000431089 942 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC25.56■■□□□ 1.68
MSH6P52701 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC25.56■■□□□ 1.68
MSH6P52701 AL596442.2-201ENST00000610240 980 ntBASIC25.56■■□□□ 1.68
MSH6P52701 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MSH6P52701 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH6P52701 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH6P52701 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH6P52701 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
MSH6P52701 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
MSH6P52701 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
MSH6P52701 AC023274.1-201ENST00000418278 595 ntBASIC25.55■■□□□ 1.68
MSH6P52701 ABCD1P5-201ENST00000445663 754 ntBASIC25.55■■□□□ 1.68
MSH6P52701 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC25.55■■□□□ 1.68
MSH6P52701 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC25.55■■□□□ 1.68
MSH6P52701 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH6P52701 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
MSH6P52701 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC25.55■■□□□ 1.68
MSH6P52701 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
MSH6P52701 AL139288.1-201ENST00000623748 933 ntBASIC25.55■■□□□ 1.68
MSH6P52701 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
MSH6P52701 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
MSH6P52701 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC25.54■■□□□ 1.68
MSH6P52701 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
MSH6P52701 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 LINC01006-201ENST00000333319 2292 ntBASIC25.54■■□□□ 1.68
MSH6P52701 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 KIRREL3-AS3-201ENST00000404882 831 ntBASIC25.54■■□□□ 1.68
MSH6P52701 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 AC105339.3-201ENST00000560043 636 ntBASIC25.54■■□□□ 1.68
MSH6P52701 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
MSH6P52701 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
MSH6P52701 AC011467.2-201ENST00000598425 242 ntBASIC25.54■■□□□ 1.68
MSH6P52701 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC25.54■■□□□ 1.68
MSH6P52701 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH6P52701 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC25.54■■□□□ 1.68
MSH6P52701 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC25.53■■□□□ 1.68
MSH6P52701 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MSH6P52701 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
MSH6P52701 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MSH6P52701 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC25.53■■□□□ 1.68
MSH6P52701 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC25.53■■□□□ 1.68
MSH6P52701 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MSH6P52701 CENPM-204ENST00000402420 688 ntTSL 5 BASIC25.53■■□□□ 1.68
MSH6P52701 FAM8A3P-201ENST00000427218 844 ntBASIC25.53■■□□□ 1.68
MSH6P52701 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MSH6P52701 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC25.53■■□□□ 1.68
MSH6P52701 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC25.53■■□□□ 1.68
MSH6P52701 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC25.53■■□□□ 1.68
MSH6P52701 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
MSH6P52701 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC25.52■■□□□ 1.68
MSH6P52701 AC099778.1-201ENST00000568593 1911 ntBASIC25.52■■□□□ 1.68
MSH6P52701 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC25.52■■□□□ 1.68
MSH6P52701 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
MSH6P52701 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC25.52■■□□□ 1.68
MSH6P52701 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH6P52701 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.52■■□□□ 1.68
MSH6P52701 TEX21P-204ENST00000641479 1693 ntBASIC25.52■■□□□ 1.68
MSH6P52701 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC25.52■■□□□ 1.68
MSH6P52701 AP002414.3-201ENST00000589352 1468 ntBASIC25.51■■□□□ 1.67
MSH6P52701 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 Z82202.1-201ENST00000623446 1880 ntBASIC25.51■■□□□ 1.67
MSH6P52701 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
MSH6P52701 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC25.51■■□□□ 1.67
MSH6P52701 CALY-203ENST00000368558 825 ntTSL 5 BASIC25.51■■□□□ 1.67
MSH6P52701 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC25.51■■□□□ 1.67
MSH6P52701 AC113404.2-201ENST00000507884 177 ntBASIC25.51■■□□□ 1.67
MSH6P52701 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC25.51■■□□□ 1.67
MSH6P52701 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
MSH6P52701 AL138831.2-201ENST00000606564 490 ntBASIC25.51■■□□□ 1.67
MSH6P52701 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC25.51■■□□□ 1.67
MSH6P52701 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC25.51■■□□□ 1.67
MSH6P52701 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC25.51■■□□□ 1.67
MSH6P52701 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
MSH6P52701 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH6P52701 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC25.51■■□□□ 1.67
MSH6P52701 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC25.51■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms