Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HADHAP40939 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HADHAP40939 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HADHAP40939 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.75■□□□□ 0.59
HADHAP40939 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 ABALON-201ENST00000629058 1903 ntBASIC18.74■□□□□ 0.59
HADHAP40939 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HADHAP40939 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HADHAP40939 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 TSPY14P-201ENST00000303979 915 ntBASIC18.74■□□□□ 0.59
HADHAP40939 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
HADHAP40939 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 MCCD1P1-208ENST00000445732 328 ntBASIC18.74■□□□□ 0.59
HADHAP40939 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.74■□□□□ 0.59
HADHAP40939 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.74■□□□□ 0.59
HADHAP40939 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.74■□□□□ 0.59
HADHAP40939 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.74■□□□□ 0.59
HADHAP40939 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.74■□□□□ 0.59
HADHAP40939 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.74■□□□□ 0.59
HADHAP40939 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HADHAP40939 MTMR9LP-203ENST00000426597 1545 ntBASIC18.74■□□□□ 0.59
HADHAP40939 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.73■□□□□ 0.59
HADHAP40939 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
HADHAP40939 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.73■□□□□ 0.59
HADHAP40939 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 AL023284.2-201ENST00000405850 579 ntBASIC18.73■□□□□ 0.59
HADHAP40939 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.73■□□□□ 0.59
HADHAP40939 TSPY15P-201ENST00000457163 923 ntBASIC18.73■□□□□ 0.59
HADHAP40939 AC128688.1-201ENST00000487626 519 ntBASIC18.73■□□□□ 0.59
HADHAP40939 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.73■□□□□ 0.59
HADHAP40939 EGLN1P1-201ENST00000531623 762 ntBASIC18.73■□□□□ 0.59
HADHAP40939 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 NAPSB-206ENST00000562112 1266 ntBASIC18.73■□□□□ 0.59
HADHAP40939 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.73■□□□□ 0.59
HADHAP40939 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.73■□□□□ 0.59
HADHAP40939 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HADHAP40939 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.73■□□□□ 0.59
HADHAP40939 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HADHAP40939 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.72■□□□□ 0.59
HADHAP40939 NOC2LP1-202ENST00000452600 2235 ntBASIC18.72■□□□□ 0.59
HADHAP40939 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.72■□□□□ 0.59
HADHAP40939 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 BX088651.1-201ENST00000540551 451 ntBASIC18.72■□□□□ 0.59
HADHAP40939 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
HADHAP40939 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.72■□□□□ 0.59
HADHAP40939 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 AC092338.2-201ENST00000568827 1415 ntBASIC18.72■□□□□ 0.59
HADHAP40939 GPAT2P1-201ENST00000444924 1672 ntBASIC18.72■□□□□ 0.59
HADHAP40939 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.72■□□□□ 0.59
HADHAP40939 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.72■□□□□ 0.59
HADHAP40939 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.72■□□□□ 0.59
HADHAP40939 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HADHAP40939 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HADHAP40939 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.71■□□□□ 0.59
HADHAP40939 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms