Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.54■□□□□ 0.72
CHRNA3P32297 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA3P32297 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA3P32297 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA3P32297 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHRNA3P32297 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CHRNA3P32297 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA3P32297 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.54■□□□□ 0.72
CHRNA3P32297 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHRNA3P32297 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.54■□□□□ 0.72
CHRNA3P32297 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 KRT8P41-201ENST00000533985 1514 ntBASIC19.53■□□□□ 0.72
CHRNA3P32297 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 AC091390.4-202ENST00000476426 537 ntBASIC19.53■□□□□ 0.72
CHRNA3P32297 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 NAPSB-206ENST00000562112 1266 ntBASIC19.53■□□□□ 0.72
CHRNA3P32297 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA3P32297 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.53■□□□□ 0.72
CHRNA3P32297 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.53■□□□□ 0.72
CHRNA3P32297 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 CYP2D8P-201ENST00000433633 1490 ntBASIC19.53■□□□□ 0.72
CHRNA3P32297 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHRNA3P32297 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA3P32297 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.52■□□□□ 0.72
CHRNA3P32297 MTMR9LP-203ENST00000426597 1545 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA3P32297 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.52■□□□□ 0.72
CHRNA3P32297 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.72
CHRNA3P32297 CRYGFP-201ENST00000418459 633 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.52■□□□□ 0.72
CHRNA3P32297 FAM207BP-201ENST00000447172 505 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.52■□□□□ 0.72
CHRNA3P32297 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA3P32297 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.52■□□□□ 0.72
CHRNA3P32297 SLC25A1P4-201ENST00000567977 778 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 AP005242.2-201ENST00000580065 1175 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.52■□□□□ 0.72
CHRNA3P32297 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHRNA3P32297 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CHRNA3P32297 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.52■□□□□ 0.72
CHRNA3P32297 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.52■□□□□ 0.72
CHRNA3P32297 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.52■□□□□ 0.71
CHRNA3P32297 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.52■□□□□ 0.71
CHRNA3P32297 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
CHRNA3P32297 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.52■□□□□ 0.71
CHRNA3P32297 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CHRNA3P32297 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.52■□□□□ 0.71
CHRNA3P32297 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.51■□□□□ 0.71
CHRNA3P32297 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.51■□□□□ 0.71
CHRNA3P32297 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.51■□□□□ 0.71
CHRNA3P32297 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.51■□□□□ 0.71
CHRNA3P32297 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.51■□□□□ 0.71
CHRNA3P32297 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.51■□□□□ 0.71
CHRNA3P32297 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 AC010947.1-201ENST00000623454 693 ntBASIC19.51■□□□□ 0.71
CHRNA3P32297 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.51■□□□□ 0.71
CHRNA3P32297 AC068587.9-201ENST00000641814 219 ntBASIC19.51■□□□□ 0.71
CHRNA3P32297 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.51■□□□□ 0.71
CHRNA3P32297 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CHRNA3P32297 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHRNA3P32297 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.5■□□□□ 0.71
CHRNA3P32297 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.5■□□□□ 0.71
CHRNA3P32297 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA3P32297 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA3P32297 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.5■□□□□ 0.71
CHRNA3P32297 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA3P32297 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CHRNA3P32297 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA3P32297 LINC01568-207ENST00000641790 1380 ntBASIC19.5■□□□□ 0.71
CHRNA3P32297 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms