Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 MIR149-201ENST00000384879 89 ntBASIC21.79■■□□□ 1.08
HLA-DOAP06340 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 GUSBP12-201ENST00000513727 720 ntBASIC21.79■■□□□ 1.08
HLA-DOAP06340 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 AC111152.3-201ENST00000569699 673 ntBASIC21.79■■□□□ 1.08
HLA-DOAP06340 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
HLA-DOAP06340 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HLA-DOAP06340 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 AC012615.1-201ENST00000565797 1299 ntBASIC21.78■■□□□ 1.08
HLA-DOAP06340 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.78■■□□□ 1.08
HLA-DOAP06340 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HLA-DOAP06340 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 AL353692.3-201ENST00000407031 1396 ntBASIC21.77■■□□□ 1.08
HLA-DOAP06340 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.77■■□□□ 1.08
HLA-DOAP06340 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HLA-DOAP06340 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HLA-DOAP06340 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.77■■□□□ 1.08
HLA-DOAP06340 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.77■■□□□ 1.08
HLA-DOAP06340 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HLA-DOAP06340 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.77■■□□□ 1.07
HLA-DOAP06340 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.77■■□□□ 1.07
HLA-DOAP06340 AC009102.3-201ENST00000623118 1491 ntBASIC21.77■■□□□ 1.07
HLA-DOAP06340 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
HLA-DOAP06340 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 AC104819.1-201ENST00000504587 486 ntBASIC21.76■■□□□ 1.07
HLA-DOAP06340 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 AC112777.1-201ENST00000540175 1423 ntBASIC21.76■■□□□ 1.07
HLA-DOAP06340 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 AL592071.1-201ENST00000611956 408 ntBASIC21.76■■□□□ 1.07
HLA-DOAP06340 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms