Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
APOBP04114 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 MTMR9LP-203ENST00000426597 1545 ntBASIC11.51□□□□□ -0.57
APOBP04114 AC244107.1-201ENST00000442033 332 ntBASIC11.51□□□□□ -0.57
APOBP04114 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC11.51□□□□□ -0.57
APOBP04114 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC11.51□□□□□ -0.57
APOBP04114 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 ORC5-208ENST00000626700 344 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 MCCD1P2-201ENST00000423228 335 ntBASIC11.51□□□□□ -0.57
APOBP04114 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 COX5A-204ENST00000567270 579 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 AL513190.1-201ENST00000621254 727 ntBASIC11.51□□□□□ -0.57
APOBP04114 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC11.51□□□□□ -0.57
APOBP04114 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC11.51□□□□□ -0.57
APOBP04114 AL078644.1-201ENST00000609881 752 ntBASIC11.51□□□□□ -0.57
APOBP04114 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC11.51□□□□□ -0.57
APOBP04114 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
APOBP04114 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
APOBP04114 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
APOBP04114 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 CFL1-202ENST00000524553 860 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 MTDHP5-201ENST00000598980 586 ntBASIC11.5□□□□□ -0.57
APOBP04114 AC239800.4-201ENST00000603712 296 ntBASIC11.5□□□□□ -0.57
APOBP04114 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
APOBP04114 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
APOBP04114 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 AC125437.2-201ENST00000625180 2167 ntBASIC11.5□□□□□ -0.57
APOBP04114 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC11.5□□□□□ -0.57
APOBP04114 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 AC012645.4-201ENST00000610691 1061 ntBASIC11.5□□□□□ -0.57
APOBP04114 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC11.5□□□□□ -0.57
APOBP04114 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
APOBP04114 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.5□□□□□ -0.57
APOBP04114 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms