Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.07■□□□□ 0.48
TNFP01375 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.07■□□□□ 0.48
TNFP01375 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.07■□□□□ 0.48
TNFP01375 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.07■□□□□ 0.48
TNFP01375 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.07■□□□□ 0.48
TNFP01375 GPR32P1-201ENST00000601788 811 ntBASIC18.07■□□□□ 0.48
TNFP01375 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
TNFP01375 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.07■□□□□ 0.48
TNFP01375 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.07■□□□□ 0.48
TNFP01375 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TNFP01375 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TNFP01375 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.07■□□□□ 0.48
TNFP01375 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.06■□□□□ 0.48
TNFP01375 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TNFP01375 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.06■□□□□ 0.48
TNFP01375 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.06■□□□□ 0.48
TNFP01375 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
TNFP01375 AC090616.6-201ENST00000582640 721 ntBASIC18.06■□□□□ 0.48
TNFP01375 AL390719.2-201ENST00000606993 987 ntBASIC18.06■□□□□ 0.48
TNFP01375 IGHV3-41-201ENST00000613121 348 ntBASIC18.06■□□□□ 0.48
TNFP01375 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.06■□□□□ 0.48
TNFP01375 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
TNFP01375 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.06■□□□□ 0.48
TNFP01375 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.06■□□□□ 0.48
TNFP01375 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 AC112777.1-201ENST00000540175 1423 ntBASIC18.06■□□□□ 0.48
TNFP01375 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TNFP01375 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.05■□□□□ 0.48
TNFP01375 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 MIR149-201ENST00000384879 89 ntBASIC18.05■□□□□ 0.48
TNFP01375 IGHGP-201ENST00000390555 1178 ntBASIC18.05■□□□□ 0.48
TNFP01375 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.05■□□□□ 0.48
TNFP01375 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.05■□□□□ 0.48
TNFP01375 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.05■□□□□ 0.48
TNFP01375 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 PRELID1P1-202ENST00000567272 903 ntBASIC18.05■□□□□ 0.48
TNFP01375 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.05■□□□□ 0.48
TNFP01375 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.05■□□□□ 0.48
TNFP01375 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.05■□□□□ 0.48
TNFP01375 AC012313.10-201ENST00000623509 926 ntBASIC18.05■□□□□ 0.48
TNFP01375 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.05■□□□□ 0.48
TNFP01375 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TNFP01375 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.04■□□□□ 0.48
TNFP01375 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 AC120498.9-201ENST00000339021 3867 ntBASIC18.04■□□□□ 0.48
TNFP01375 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms