Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
RTN3O95197 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.5■□□□□ 0.71
RTN3O95197 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.5■□□□□ 0.71
RTN3O95197 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.5■□□□□ 0.71
RTN3O95197 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
RTN3O95197 VENTXP5-201ENST00000523979 775 ntBASIC19.5■□□□□ 0.71
RTN3O95197 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.5■□□□□ 0.71
RTN3O95197 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.5■□□□□ 0.71
RTN3O95197 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.5■□□□□ 0.71
RTN3O95197 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.5■□□□□ 0.71
RTN3O95197 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
RTN3O95197 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.5■□□□□ 0.71
RTN3O95197 AC005332.1-201ENST00000577698 1310 ntBASIC19.5■□□□□ 0.71
RTN3O95197 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.5■□□□□ 0.71
RTN3O95197 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 AC092597.1-201ENST00000487352 616 ntBASIC19.49■□□□□ 0.71
RTN3O95197 KRT18P41-201ENST00000518924 1277 ntBASIC19.49■□□□□ 0.71
RTN3O95197 AC009065.1-201ENST00000564055 1225 ntBASIC19.49■□□□□ 0.71
RTN3O95197 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.49■□□□□ 0.71
RTN3O95197 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.49■□□□□ 0.71
RTN3O95197 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.49■□□□□ 0.71
RTN3O95197 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.49■□□□□ 0.71
RTN3O95197 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.49■□□□□ 0.71
RTN3O95197 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
RTN3O95197 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
RTN3O95197 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RTN3O95197 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.48■□□□□ 0.71
RTN3O95197 IER3-202ENST00000376377 1350 ntBASIC19.48■□□□□ 0.71
RTN3O95197 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 AP000593.1-201ENST00000393668 712 ntBASIC19.48■□□□□ 0.71
RTN3O95197 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.48■□□□□ 0.71
RTN3O95197 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.48■□□□□ 0.71
RTN3O95197 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.48■□□□□ 0.71
RTN3O95197 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.48■□□□□ 0.71
RTN3O95197 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.48■□□□□ 0.71
RTN3O95197 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RTN3O95197 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
RTN3O95197 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
RTN3O95197 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RTN3O95197 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.47■□□□□ 0.71
RTN3O95197 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms