Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC23.23■■□□□ 1.31
CACNA1FO60840 AP003733.1-201ENST00000491725 852 ntBASIC23.23■■□□□ 1.31
CACNA1FO60840 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.23■■□□□ 1.31
CACNA1FO60840 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.23■■□□□ 1.31
CACNA1FO60840 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC23.23■■□□□ 1.31
CACNA1FO60840 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
CACNA1FO60840 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.23■■□□□ 1.31
CACNA1FO60840 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CACNA1FO60840 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC23.23■■□□□ 1.31
CACNA1FO60840 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC23.22■■□□□ 1.31
CACNA1FO60840 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 DDT-203ENST00000403754 569 ntTSL 3 BASIC23.22■■□□□ 1.31
CACNA1FO60840 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 DDT-206ENST00000430101 573 ntTSL 2 BASIC23.22■■□□□ 1.31
CACNA1FO60840 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC23.22■■□□□ 1.31
CACNA1FO60840 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC23.22■■□□□ 1.31
CACNA1FO60840 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CACNA1FO60840 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CACNA1FO60840 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CACNA1FO60840 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC23.22■■□□□ 1.31
CACNA1FO60840 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CACNA1FO60840 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 AL592071.1-201ENST00000611956 408 ntBASIC23.21■■□□□ 1.31
CACNA1FO60840 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.21■■□□□ 1.31
CACNA1FO60840 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 AC099343.3-201ENST00000605834 2503 ntBASIC23.21■■□□□ 1.31
CACNA1FO60840 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.21■■□□□ 1.31
CACNA1FO60840 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CACNA1FO60840 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 AC093458.2-201ENST00000623150 629 ntBASIC23.21■■□□□ 1.31
CACNA1FO60840 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CACNA1FO60840 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
CACNA1FO60840 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.31
CACNA1FO60840 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CACNA1FO60840 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.2■■□□□ 1.3
CACNA1FO60840 AP002383.4-201ENST00000442518 975 ntBASIC23.2■■□□□ 1.3
CACNA1FO60840 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.2■■□□□ 1.3
CACNA1FO60840 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CACNA1FO60840 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
CACNA1FO60840 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 AL353692.3-201ENST00000407031 1396 ntBASIC23.2■■□□□ 1.3
CACNA1FO60840 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CACNA1FO60840 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC23.2■■□□□ 1.3
CACNA1FO60840 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 Z83836.1-201ENST00000624605 1642 ntBASIC23.19■■□□□ 1.3
CACNA1FO60840 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.19■■□□□ 1.3
CACNA1FO60840 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
CACNA1FO60840 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CACNA1FO60840 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.19■■□□□ 1.3
CACNA1FO60840 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.19■■□□□ 1.3
CACNA1FO60840 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC23.19■■□□□ 1.3
CACNA1FO60840 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC23.19■■□□□ 1.3
CACNA1FO60840 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 AC008687.5-201ENST00000593746 558 ntBASIC23.19■■□□□ 1.3
CACNA1FO60840 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CACNA1FO60840 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms