Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN3O15551 ANO7L1-203ENST00000602586 1720 ntBASIC20.23■□□□□ 0.83
CLDN3O15551 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CLDN3O15551 MYC-208ENST00000641036 567 ntBASIC20.23■□□□□ 0.83
CLDN3O15551 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN3O15551 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN3O15551 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 AC112777.1-201ENST00000540175 1423 ntBASIC20.22■□□□□ 0.83
CLDN3O15551 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 AL031598.1-201ENST00000561511 1773 ntBASIC20.22■□□□□ 0.83
CLDN3O15551 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 MIR3180-4-201ENST00000582223 153 ntBASIC20.22■□□□□ 0.83
CLDN3O15551 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CLDN3O15551 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.22■□□□□ 0.83
CLDN3O15551 AL157888.1-201ENST00000631930 593 ntBASIC20.22■□□□□ 0.83
CLDN3O15551 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN3O15551 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLDN3O15551 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CLDN3O15551 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.21■□□□□ 0.83
CLDN3O15551 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.21■□□□□ 0.83
CLDN3O15551 AL499627.1-201ENST00000569373 2188 ntBASIC20.21■□□□□ 0.83
CLDN3O15551 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
CLDN3O15551 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.21■□□□□ 0.83
CLDN3O15551 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 AC112907.2-201ENST00000448639 330 ntBASIC20.21■□□□□ 0.83
CLDN3O15551 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLDN3O15551 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLDN3O15551 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN3O15551 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLDN3O15551 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLDN3O15551 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CLDN3O15551 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN3O15551 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.2■□□□□ 0.82
CLDN3O15551 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN3O15551 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLDN3O15551 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CLDN3O15551 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CLDN3O15551 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN3O15551 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CLDN3O15551 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN3O15551 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
CLDN3O15551 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN3O15551 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms