Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC188H7C350 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC188H7C350 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC188H7C350 AC131212.4-201ENST00000623606 975 ntBASIC19.28■□□□□ 0.68
CCDC188H7C350 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC188H7C350 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC188H7C350 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC188H7C350 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC188H7C350 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC188H7C350 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC188H7C350 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC188H7C350 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC188H7C350 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC188H7C350 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.27■□□□□ 0.68
CCDC188H7C350 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC188H7C350 UNC93B5-201ENST00000530315 699 ntBASIC19.27■□□□□ 0.68
CCDC188H7C350 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC188H7C350 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC188H7C350 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC188H7C350 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC188H7C350 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC188H7C350 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 AC139713.2-201ENST00000641328 2723 ntBASIC19.26■□□□□ 0.67
CCDC188H7C350 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC188H7C350 AC012317.2-201ENST00000623305 2251 ntBASIC19.26■□□□□ 0.67
CCDC188H7C350 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC188H7C350 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC188H7C350 AC069152.1-201ENST00000438030 544 ntBASIC19.26■□□□□ 0.67
CCDC188H7C350 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 KRT16P5-201ENST00000455284 522 ntBASIC19.26■□□□□ 0.67
CCDC188H7C350 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC188H7C350 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC188H7C350 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC188H7C350 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC188H7C350 MTDHP1-201ENST00000605323 784 ntBASIC19.26■□□□□ 0.67
CCDC188H7C350 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC188H7C350 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC188H7C350 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC188H7C350 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
CCDC188H7C350 AP000593.1-201ENST00000393668 712 ntBASIC19.25■□□□□ 0.67
CCDC188H7C350 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CCDC188H7C350 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC188H7C350 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC188H7C350 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CCDC188H7C350 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC188H7C350 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms