Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A5A8TX70 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL6A5A8TX70 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 TSPY16P-201ENST00000449843 468 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 AC136632.2-201ENST00000512891 861 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 AC233723.2-201ENST00000623798 2106 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 SDHAP1-207ENST00000440850 2000 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 PDPK2P-202ENST00000562415 1191 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 AC064836.3-201ENST00000607928 673 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 AC034236.2-201ENST00000606662 1610 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 AP005212.1-201ENST00000581547 1997 ntBASIC14.3□□□□□ -0.12
COL6A5A8TX70 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A5A8TX70 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A5A8TX70 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 MIR661-201ENST00000384842 89 ntBASIC14.29□□□□□ -0.12
COL6A5A8TX70 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 MIR6799-201ENST00000620297 69 ntBASIC14.29□□□□□ -0.12
COL6A5A8TX70 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 HCG4B-203ENST00000450128 991 ntBASIC14.29□□□□□ -0.12
COL6A5A8TX70 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 AC073592.5-201ENST00000624854 528 ntBASIC14.29□□□□□ -0.12
COL6A5A8TX70 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
COL6A5A8TX70 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A5A8TX70 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 VN2R19P-201ENST00000442399 1052 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 MEG3-211ENST00000452514 461 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 AC004817.3-201ENST00000602957 2129 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms