Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
TRAV40A0A0B4J280 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.08■□□□□ 0.01
TRAV40A0A0B4J280 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 AC093525.10-201ENST00000625130 1569 ntBASIC15.08■□□□□ 0
TRAV40A0A0B4J280 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 AL020996.1-203ENST00000536896 2307 ntBASIC15.08■□□□□ 0
TRAV40A0A0B4J280 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 TSSC2-201ENST00000450217 709 ntBASIC15.08■□□□□ 0
TRAV40A0A0B4J280 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV40A0A0B4J280 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.07■□□□□ 0
TRAV40A0A0B4J280 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 AL049812.1-201ENST00000432563 2267 ntBASIC15.07■□□□□ 0
TRAV40A0A0B4J280 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 DUSP5P1-201ENST00000441325 1139 ntBASIC15.07■□□□□ 0
TRAV40A0A0B4J280 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV40A0A0B4J280 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AL357033.4-201ENST00000617703 1807 ntBASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 KRT126P-201ENST00000549467 1181 ntBASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AC009065.1-201ENST00000564055 1225 ntBASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 NPAP1P7-201ENST00000613027 823 ntBASIC15.06■□□□□ 0
TRAV40A0A0B4J280 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 AC012313.10-201ENST00000623509 926 ntBASIC15.06■□□□□ 0
TRAV40A0A0B4J280 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.06■□□□□ 0
TRAV40A0A0B4J280 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms