Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.95■□□□□ 0.46
VPS4AQ9UN37 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 AC005332.8-201ENST00000622750 2735 ntBASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 EGLN1P1-201ENST00000531623 762 ntBASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS4AQ9UN37 FSCN1P1-201ENST00000568912 1481 ntBASIC17.95■□□□□ 0.46
VPS4AQ9UN37 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.94■□□□□ 0.46
VPS4AQ9UN37 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 ECEL1P2-202ENST00000465689 757 ntBASIC17.94■□□□□ 0.46
VPS4AQ9UN37 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 AC022616.7-201ENST00000525383 220 ntBASIC17.94■□□□□ 0.46
VPS4AQ9UN37 KRT126P-201ENST00000549467 1181 ntBASIC17.94■□□□□ 0.46
VPS4AQ9UN37 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS4AQ9UN37 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 TSPY23P-201ENST00000440136 739 ntBASIC17.93■□□□□ 0.46
VPS4AQ9UN37 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS4AQ9UN37 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms