Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.31■■□□□ 1
DDX41Q9UJV9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
DDX41Q9UJV9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
DDX41Q9UJV9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.31■■□□□ 1
DDX41Q9UJV9 IER3-202ENST00000376377 1350 ntBASIC21.31■■□□□ 1
DDX41Q9UJV9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
DDX41Q9UJV9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX41Q9UJV9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.3■■□□□ 1
DDX41Q9UJV9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 KRT8P3-201ENST00000519669 1449 ntBASIC21.3■■□□□ 1
DDX41Q9UJV9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
DDX41Q9UJV9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 SPDYE15P-201ENST00000424157 909 ntBASIC21.3■■□□□ 1
DDX41Q9UJV9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.3■■□□□ 1
DDX41Q9UJV9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
DDX41Q9UJV9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.3■■□□□ 1
DDX41Q9UJV9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.3■■□□□ 1
DDX41Q9UJV9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.3■■□□□ 1
DDX41Q9UJV9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
DDX41Q9UJV9 AC083849.1-201ENST00000615227 514 ntBASIC21.3■■□□□ 1
DDX41Q9UJV9 AC116407.4-201ENST00000623319 1061 ntBASIC21.3■■□□□ 1
DDX41Q9UJV9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX41Q9UJV9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
DDX41Q9UJV9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.3■■□□□ 1
DDX41Q9UJV9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.3■■□□□ 1
DDX41Q9UJV9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.3■■□□□ 1
DDX41Q9UJV9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.3■■□□□ 1
DDX41Q9UJV9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.29■■□□□ 1
DDX41Q9UJV9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.29■■□□□ 1
DDX41Q9UJV9 AL136038.3-201ENST00000561909 1096 ntBASIC21.29■■□□□ 1
DDX41Q9UJV9 AL390961.4-201ENST00000623958 2535 ntBASIC21.29■■□□□ 1
DDX41Q9UJV9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
DDX41Q9UJV9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
DDX41Q9UJV9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX41Q9UJV9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
DDX41Q9UJV9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.28■■□□□ 1
DDX41Q9UJV9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.28■■□□□ 1
DDX41Q9UJV9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.28■■□□□ 1
DDX41Q9UJV9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.28■■□□□ 1
DDX41Q9UJV9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX41Q9UJV9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
DDX41Q9UJV9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.28■■□□□ 1
DDX41Q9UJV9 TEX21P-204ENST00000641479 1693 ntBASIC21.28■■□□□ 1
DDX41Q9UJV9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
DDX41Q9UJV9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
DDX41Q9UJV9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.27■■□□□ 1
DDX41Q9UJV9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.27■■□□□ 1
DDX41Q9UJV9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
DDX41Q9UJV9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms