Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.33■□□□□ 0.52
MKS1Q9NXB0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 AC133681.1-201ENST00000465482 601 ntBASIC18.32■□□□□ 0.52
MKS1Q9NXB0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 AC006116.8-202ENST00000587620 1550 ntBASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 PHGDH-209ENST00000641074 1780 ntBASIC18.32■□□□□ 0.52
MKS1Q9NXB0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.32■□□□□ 0.52
MKS1Q9NXB0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 AL645608.8-201ENST00000606034 2086 ntBASIC18.31■□□□□ 0.52
MKS1Q9NXB0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 MIR564-202ENST00000385049 94 ntBASIC18.31■□□□□ 0.52
MKS1Q9NXB0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.31■□□□□ 0.52
MKS1Q9NXB0 AL023875.1-201ENST00000640777 796 ntBASIC18.31■□□□□ 0.52
MKS1Q9NXB0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
MKS1Q9NXB0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 KSR1P1-201ENST00000446298 240 ntBASIC18.3■□□□□ 0.52
MKS1Q9NXB0 AC026366.1-201ENST00000488803 879 ntBASIC18.3■□□□□ 0.52
MKS1Q9NXB0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.3■□□□□ 0.52
MKS1Q9NXB0 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms