Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 ANO7L1-203ENST00000602586 1720 ntBASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 RGMA-211ENST00000557420 989 ntTSL 3 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 AC004264.1-201ENST00000608354 794 ntBASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHMP1AQ9HD42 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AC069152.1-201ENST00000438030 544 ntBASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 UNC93B4-201ENST00000505679 747 ntBASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AL160286.2-201ENST00000567150 934 ntBASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CHMP1AQ9HD42 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.14
CHMP1AQ9HD42 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.96■□□□□ 0.14
CHMP1AQ9HD42 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.96■□□□□ 0.14
CHMP1AQ9HD42 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 POM121L13P-201ENST00000422362 380 ntBASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ABALON-201ENST00000629058 1903 ntBASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CHMP1AQ9HD42 NBPF21P-201ENST00000425093 1451 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms