Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 DUSP5P1-201ENST00000441325 1139 ntBASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 AL136038.4-201ENST00000603606 1261 ntBASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 AL162741.1-201ENST00000565563 1558 ntBASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRAIPQ9BWF2 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC034236.2-201ENST00000606662 1610 ntBASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC010240.3-201ENST00000607688 395 ntBASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC068587.9-201ENST00000641814 219 ntBASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC093525.10-201ENST00000625130 1569 ntBASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 AC093503.3-201ENST00000624917 2352 ntBASIC20.28■□□□□ 0.84
TRAIPQ9BWF2 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 AL121672.3-201ENST00000608644 468 ntBASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAIPQ9BWF2 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRAIPQ9BWF2 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.27■□□□□ 0.83
TRAIPQ9BWF2 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRAIPQ9BWF2 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 AC016734.2-201ENST00000624325 1377 ntBASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAIPQ9BWF2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms