Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
DEPDC4Q8N2C3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 AL135905.2-201ENST00000584934 1404 ntBASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 AC126763.1-201ENST00000552015 2118 ntBASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
DEPDC4Q8N2C3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 AP006587.1-201ENST00000534129 1502 ntBASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
DEPDC4Q8N2C3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 AC124016.1-201ENST00000609552 612 ntBASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
DEPDC4Q8N2C3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms