Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VRK3Q8IV63 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
VRK3Q8IV63 RNF165-205ENST00000588679 2904 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 AP000593.1-201ENST00000393668 712 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 AC104390.1-201ENST00000555663 520 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 GCSHP2-201ENST00000560971 527 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 AL441883.1-201ENST00000566170 1045 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 RN7SL850P-201ENST00000579959 291 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 AC139887.4-201ENST00000607877 719 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 AC006011.2-201ENST00000621313 1158 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 KRT8P7-201ENST00000533003 1432 ntBASIC18.12■□□□□ 0.49
VRK3Q8IV63 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VRK3Q8IV63 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
VRK3Q8IV63 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 AC117947.1-201ENST00000427448 529 ntBASIC18.11■□□□□ 0.49
VRK3Q8IV63 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 AL163051.1-201ENST00000569214 1512 ntBASIC18.11■□□□□ 0.49
VRK3Q8IV63 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.11■□□□□ 0.49
VRK3Q8IV63 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VRK3Q8IV63 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms