Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.17■□□□□ 0.98
ATL3Q6DD88 GNAS-203ENST00000306120 1878 ntBASIC21.17■□□□□ 0.98
ATL3Q6DD88 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATL3Q6DD88 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 AC067852.2-201ENST00000590513 2313 ntBASIC21.16■□□□□ 0.98
ATL3Q6DD88 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 SLC25A1P4-201ENST00000567977 778 ntBASIC21.16■□□□□ 0.98
ATL3Q6DD88 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 MIR3180-5-201ENST00000583743 153 ntBASIC21.16■□□□□ 0.98
ATL3Q6DD88 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATL3Q6DD88 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ATL3Q6DD88 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 REXO1L9P-201ENST00000604264 2108 ntBASIC21.15■□□□□ 0.98
ATL3Q6DD88 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.15■□□□□ 0.98
ATL3Q6DD88 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATL3Q6DD88 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ATL3Q6DD88 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ATL3Q6DD88 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ATL3Q6DD88 KRT8P7-201ENST00000533003 1432 ntBASIC21.14■□□□□ 0.98
ATL3Q6DD88 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.14■□□□□ 0.98
ATL3Q6DD88 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ATL3Q6DD88 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ATL3Q6DD88 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ATL3Q6DD88 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ATL3Q6DD88 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ATL3Q6DD88 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 FAM201B-201ENST00000458407 597 ntBASIC21.14■□□□□ 0.97
ATL3Q6DD88 AC097488.1-201ENST00000507834 756 ntBASIC21.14■□□□□ 0.97
ATL3Q6DD88 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ATL3Q6DD88 AP001412.1-201ENST00000608405 714 ntBASIC21.14■□□□□ 0.97
ATL3Q6DD88 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms