Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 KRT18P35-201ENST00000510488 1269 ntBASIC21.1■□□□□ 0.97
LONRF3Q496Y0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 C2orf69P3-201ENST00000565542 1120 ntBASIC21.1■□□□□ 0.97
LONRF3Q496Y0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.1■□□□□ 0.97
LONRF3Q496Y0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 NOC2LP1-202ENST00000452600 2235 ntBASIC21.09■□□□□ 0.97
LONRF3Q496Y0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LONRF3Q496Y0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 ARMC10P1-201ENST00000313754 855 ntBASIC21.08■□□□□ 0.97
LONRF3Q496Y0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 FAM207BP-201ENST00000447172 505 ntBASIC21.08■□□□□ 0.97
LONRF3Q496Y0 AP005242.2-201ENST00000580065 1175 ntBASIC21.08■□□□□ 0.97
LONRF3Q496Y0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 AP000692.2-201ENST00000608391 879 ntBASIC21.08■□□□□ 0.97
LONRF3Q496Y0 DGCR10-201ENST00000609839 495 ntBASIC21.08■□□□□ 0.97
LONRF3Q496Y0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.08■□□□□ 0.97
LONRF3Q496Y0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LONRF3Q496Y0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.07■□□□□ 0.96
LONRF3Q496Y0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 MFAP1P1-201ENST00000442257 1255 ntBASIC21.07■□□□□ 0.96
LONRF3Q496Y0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 AC005332.8-201ENST00000622750 2735 ntBASIC21.07■□□□□ 0.96
LONRF3Q496Y0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 RCC2P3-201ENST00000418112 1537 ntBASIC21.07■□□□□ 0.96
LONRF3Q496Y0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LONRF3Q496Y0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms