Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CX3CL1P78423 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CX3CL1P78423 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CX3CL1P78423 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CX3CL1P78423 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
CX3CL1P78423 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.96□□□□□ -0.01
CX3CL1P78423 MIR1238-201ENST00000408483 83 ntBASIC14.96□□□□□ -0.01
CX3CL1P78423 TSPY15P-201ENST00000457163 923 ntBASIC14.96□□□□□ -0.01
CX3CL1P78423 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 CA15P1-201ENST00000481698 905 ntBASIC14.96□□□□□ -0.01
CX3CL1P78423 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CX3CL1P78423 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
CX3CL1P78423 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.96□□□□□ -0.01
CX3CL1P78423 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CX3CL1P78423 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.96□□□□□ -0.01
CX3CL1P78423 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.96□□□□□ -0.01
CX3CL1P78423 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
CX3CL1P78423 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.02
CX3CL1P78423 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CX3CL1P78423 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.96□□□□□ -0.02
CX3CL1P78423 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
CX3CL1P78423 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CX3CL1P78423 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 AL133373.2-201ENST00000623187 2828 ntBASIC14.95□□□□□ -0.02
CX3CL1P78423 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 AL512353.2-201ENST00000448759 1962 ntBASIC14.95□□□□□ -0.02
CX3CL1P78423 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.95□□□□□ -0.02
CX3CL1P78423 HTR7P1-202ENST00000624664 4411 ntBASIC14.95□□□□□ -0.02
CX3CL1P78423 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 AL390955.1-201ENST00000428694 934 ntBASIC14.95□□□□□ -0.02
CX3CL1P78423 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.95□□□□□ -0.02
CX3CL1P78423 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.95□□□□□ -0.02
CX3CL1P78423 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC14.95□□□□□ -0.02
CX3CL1P78423 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.95□□□□□ -0.02
CX3CL1P78423 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.95□□□□□ -0.02
CX3CL1P78423 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.95□□□□□ -0.02
CX3CL1P78423 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CX3CL1P78423 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.95□□□□□ -0.02
CX3CL1P78423 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CX3CL1P78423 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.95□□□□□ -0.02
CX3CL1P78423 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.94□□□□□ -0.02
CX3CL1P78423 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CX3CL1P78423 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.94□□□□□ -0.02
CX3CL1P78423 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
CX3CL1P78423 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms