Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TPM4P67936 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TPM4P67936 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.8■□□□□ 0.92
TPM4P67936 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 MYC-209ENST00000641252 345 ntBASIC20.8■□□□□ 0.92
TPM4P67936 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TPM4P67936 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TPM4P67936 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.8■□□□□ 0.92
TPM4P67936 AC135776.1-201ENST00000319817 2481 ntBASIC20.8■□□□□ 0.92
TPM4P67936 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TPM4P67936 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
TPM4P67936 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.79■□□□□ 0.92
TPM4P67936 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
TPM4P67936 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
TPM4P67936 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TPM4P67936 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.79■□□□□ 0.92
TPM4P67936 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 AL137784.2-201ENST00000607332 1000 ntBASIC20.79■□□□□ 0.92
TPM4P67936 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.79■□□□□ 0.92
TPM4P67936 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
TPM4P67936 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.79■□□□□ 0.92
TPM4P67936 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TPM4P67936 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TPM4P67936 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TPM4P67936 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
TPM4P67936 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.78■□□□□ 0.92
TPM4P67936 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.78■□□□□ 0.92
TPM4P67936 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.78■□□□□ 0.92
TPM4P67936 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.78■□□□□ 0.92
TPM4P67936 SLC25A6P5-201ENST00000435663 894 ntBASIC20.78■□□□□ 0.92
TPM4P67936 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.78■□□□□ 0.92
TPM4P67936 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM4P67936 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TPM4P67936 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM4P67936 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TPM4P67936 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM4P67936 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
TPM4P67936 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
TPM4P67936 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
TPM4P67936 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.77■□□□□ 0.92
TPM4P67936 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM4P67936 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM4P67936 NBPF21P-201ENST00000425093 1451 ntBASIC20.77■□□□□ 0.92
TPM4P67936 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.77■□□□□ 0.92
TPM4P67936 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
TPM4P67936 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.77■□□□□ 0.92
TPM4P67936 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM4P67936 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM4P67936 KRT8P41-201ENST00000533985 1514 ntBASIC20.77■□□□□ 0.92
TPM4P67936 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.77■□□□□ 0.91
TPM4P67936 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TPM4P67936 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms