Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.36■□□□□ 0.69
HDAC4P56524 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.36■□□□□ 0.69
HDAC4P56524 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.36■□□□□ 0.69
HDAC4P56524 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.36■□□□□ 0.69
HDAC4P56524 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.36■□□□□ 0.69
HDAC4P56524 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.36■□□□□ 0.69
HDAC4P56524 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.36■□□□□ 0.69
HDAC4P56524 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.36■□□□□ 0.69
HDAC4P56524 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDAC4P56524 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.36■□□□□ 0.69
HDAC4P56524 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HDAC4P56524 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HDAC4P56524 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.35■□□□□ 0.69
HDAC4P56524 MYC-208ENST00000641036 567 ntBASIC19.35■□□□□ 0.69
HDAC4P56524 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.35■□□□□ 0.69
HDAC4P56524 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.35■□□□□ 0.69
HDAC4P56524 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 MYLKP1-201ENST00000509077 1580 ntBASIC19.35■□□□□ 0.69
HDAC4P56524 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.35■□□□□ 0.69
HDAC4P56524 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDAC4P56524 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 HOXB1-202ENST00000577092 1414 ntBASIC19.34■□□□□ 0.69
HDAC4P56524 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
HDAC4P56524 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.34■□□□□ 0.69
HDAC4P56524 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
HDAC4P56524 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
HDAC4P56524 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDAC4P56524 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
HDAC4P56524 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
HDAC4P56524 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
HDAC4P56524 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HDAC4P56524 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms