Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA3P55318 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA3P55318 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA3P55318 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.94□□□□□ -0.18
FOXA3P55318 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 AC141586.5-201ENST00000624546 2050 ntBASIC13.94□□□□□ -0.18
FOXA3P55318 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 AC073210.2-201ENST00000430369 194 ntBASIC13.94□□□□□ -0.18
FOXA3P55318 TSPY21P-201ENST00000433481 731 ntBASIC13.94□□□□□ -0.18
FOXA3P55318 SERP1-205ENST00000487153 657 ntTSL 4 BASIC13.94□□□□□ -0.18
FOXA3P55318 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC13.94□□□□□ -0.18
FOXA3P55318 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA3P55318 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA3P55318 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
FOXA3P55318 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA3P55318 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
FOXA3P55318 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
FOXA3P55318 AC093677.2-201ENST00000600169 1863 ntBASIC13.93□□□□□ -0.18
FOXA3P55318 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA3P55318 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
FOXA3P55318 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA3P55318 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA3P55318 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 YBX1P10-201ENST00000444752 975 ntBASIC13.93□□□□□ -0.18
FOXA3P55318 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC13.93□□□□□ -0.18
FOXA3P55318 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
FOXA3P55318 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 MYC-208ENST00000641036 567 ntBASIC13.93□□□□□ -0.18
FOXA3P55318 HEIH-201ENST00000623091 1652 ntBASIC13.93□□□□□ -0.18
FOXA3P55318 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA3P55318 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA3P55318 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
FOXA3P55318 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
FOXA3P55318 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA3P55318 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA3P55318 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA3P55318 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms