Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CX3CR1P49238 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CR1P49238 GCSHP5-201ENST00000443090 522 ntBASIC16.32■□□□□ 0.2
CX3CR1P49238 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CR1P49238 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 NUDT16P1-203ENST00000513809 620 ntBASIC16.32■□□□□ 0.2
CX3CR1P49238 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CR1P49238 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CX3CR1P49238 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.32■□□□□ 0.2
CX3CR1P49238 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
CX3CR1P49238 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CX3CR1P49238 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CR1P49238 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 RPS2P55-201ENST00000397318 883 ntBASIC16.31■□□□□ 0.2
CX3CR1P49238 AC107956.1-201ENST00000494359 873 ntBASIC16.31■□□□□ 0.2
CX3CR1P49238 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 SLC25A1P4-201ENST00000567977 778 ntBASIC16.31■□□□□ 0.2
CX3CR1P49238 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.31■□□□□ 0.2
CX3CR1P49238 AP001412.1-201ENST00000608405 714 ntBASIC16.31■□□□□ 0.2
CX3CR1P49238 DGCR10-201ENST00000609839 495 ntBASIC16.31■□□□□ 0.2
CX3CR1P49238 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.31■□□□□ 0.2
CX3CR1P49238 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CR1P49238 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.31■□□□□ 0.2
CX3CR1P49238 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CX3CR1P49238 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.31■□□□□ 0.2
CX3CR1P49238 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CX3CR1P49238 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.3■□□□□ 0.2
CX3CR1P49238 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CR1P49238 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.3■□□□□ 0.2
CX3CR1P49238 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 AC112777.1-201ENST00000540175 1423 ntBASIC16.3■□□□□ 0.2
CX3CR1P49238 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.3■□□□□ 0.2
CX3CR1P49238 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CR1P49238 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CR1P49238 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CX3CR1P49238 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.3■□□□□ 0.2
CX3CR1P49238 MFAP1P1-201ENST00000442257 1255 ntBASIC16.3■□□□□ 0.2
CX3CR1P49238 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.3■□□□□ 0.2
CX3CR1P49238 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.3■□□□□ 0.2
CX3CR1P49238 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.3■□□□□ 0.2
CX3CR1P49238 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CX3CR1P49238 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms