Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.76■□□□□ 0.59
RPA3P35244 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.76■□□□□ 0.59
RPA3P35244 AP006294.2-201ENST00000641667 209 ntBASIC18.76■□□□□ 0.59
RPA3P35244 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.76■□□□□ 0.59
RPA3P35244 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.76■□□□□ 0.59
RPA3P35244 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.76■□□□□ 0.59
RPA3P35244 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
RPA3P35244 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
RPA3P35244 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 MTMR9LP-203ENST00000426597 1545 ntBASIC18.75■□□□□ 0.59
RPA3P35244 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.75■□□□□ 0.59
RPA3P35244 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RPA3P35244 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
RPA3P35244 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RPA3P35244 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.74■□□□□ 0.59
RPA3P35244 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.74■□□□□ 0.59
RPA3P35244 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.74■□□□□ 0.59
RPA3P35244 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.74■□□□□ 0.59
RPA3P35244 RCC2P6-201ENST00000526625 1557 ntBASIC18.74■□□□□ 0.59
RPA3P35244 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 AF186192.3-201ENST00000583427 947 ntBASIC18.74■□□□□ 0.59
RPA3P35244 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RPA3P35244 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RPA3P35244 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RPA3P35244 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.73■□□□□ 0.59
RPA3P35244 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.73■□□□□ 0.59
RPA3P35244 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.73■□□□□ 0.59
RPA3P35244 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RPA3P35244 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
RPA3P35244 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.73■□□□□ 0.59
RPA3P35244 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 NIFKP9-201ENST00000419265 221 ntBASIC18.73■□□□□ 0.59
RPA3P35244 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RPA3P35244 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms