Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CTSDP07339 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.42■□□□□ 0.06
CTSDP07339 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.42■□□□□ 0.06
CTSDP07339 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CTSDP07339 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.42■□□□□ 0.06
CTSDP07339 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CTSDP07339 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.41■□□□□ 0.06
CTSDP07339 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC15.41■□□□□ 0.06
CTSDP07339 PPP1R14BP3-201ENST00000509033 445 ntBASIC15.41■□□□□ 0.06
CTSDP07339 AC090192.1-201ENST00000517740 490 ntBASIC15.41■□□□□ 0.06
CTSDP07339 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 AC060766.5-201ENST00000590539 871 ntBASIC15.41■□□□□ 0.06
CTSDP07339 AL121832.2-201ENST00000610979 668 ntBASIC15.41■□□□□ 0.06
CTSDP07339 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.41■□□□□ 0.06
CTSDP07339 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.41■□□□□ 0.06
CTSDP07339 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CTSDP07339 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.4■□□□□ 0.06
CTSDP07339 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CTSDP07339 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
CTSDP07339 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CTSDP07339 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CTSDP07339 POU5F1P3-201ENST00000428824 1078 ntBASIC15.4■□□□□ 0.06
CTSDP07339 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.4■□□□□ 0.06
CTSDP07339 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.4■□□□□ 0.06
CTSDP07339 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
CTSDP07339 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.4■□□□□ 0.06
CTSDP07339 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CTSDP07339 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CTSDP07339 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.39■□□□□ 0.05
CTSDP07339 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.39■□□□□ 0.05
CTSDP07339 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CTSDP07339 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.39■□□□□ 0.05
CTSDP07339 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC15.39■□□□□ 0.05
CTSDP07339 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CTSDP07339 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.39■□□□□ 0.05
CTSDP07339 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.39■□□□□ 0.05
CTSDP07339 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.39■□□□□ 0.05
CTSDP07339 TK2-208ENST00000545043 1120 ntTSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC15.39■□□□□ 0.05
CTSDP07339 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CTSDP07339 AC008687.6-201ENST00000596318 630 ntBASIC15.39■□□□□ 0.05
CTSDP07339 WT1-AS_3.1-201ENST00000613262 234 ntBASIC15.39■□□□□ 0.05
CTSDP07339 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms