Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC22.66■■□□□ 1.22
COL4A1P02462 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
COL4A1P02462 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC22.66■■□□□ 1.22
COL4A1P02462 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
COL4A1P02462 AC148477.8-201ENST00000624298 468 ntBASIC22.66■■□□□ 1.22
COL4A1P02462 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.66■■□□□ 1.22
COL4A1P02462 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL4A1P02462 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.65■■□□□ 1.22
COL4A1P02462 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC22.65■■□□□ 1.22
COL4A1P02462 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 EMD-201ENST00000369835 966 ntTSL 3 BASIC22.65■■□□□ 1.22
COL4A1P02462 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
COL4A1P02462 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL4A1P02462 AC120114.3-201ENST00000611923 658 ntBASIC22.65■■□□□ 1.22
COL4A1P02462 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 AC005082.1-201ENST00000413042 2259 ntBASIC22.65■■□□□ 1.22
COL4A1P02462 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
COL4A1P02462 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.65■■□□□ 1.22
COL4A1P02462 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL4A1P02462 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
COL4A1P02462 ABR-217ENST00000572441 563 ntTSL 4 BASIC22.65■■□□□ 1.22
COL4A1P02462 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.65■■□□□ 1.22
COL4A1P02462 AC005332.7-201ENST00000614046 2005 ntBASIC22.65■■□□□ 1.22
COL4A1P02462 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC22.64■■□□□ 1.22
COL4A1P02462 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL4A1P02462 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC22.64■■□□□ 1.22
COL4A1P02462 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
COL4A1P02462 SDHAP2-201ENST00000455183 2001 ntBASIC22.64■■□□□ 1.21
COL4A1P02462 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL4A1P02462 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC22.64■■□□□ 1.21
COL4A1P02462 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL4A1P02462 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC22.64■■□□□ 1.21
COL4A1P02462 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL4A1P02462 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.63■■□□□ 1.21
COL4A1P02462 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.63■■□□□ 1.21
COL4A1P02462 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC22.63■■□□□ 1.21
COL4A1P02462 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
COL4A1P02462 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 DFFB-203ENST00000341385 572 ntTSL 5 BASIC22.63■■□□□ 1.21
COL4A1P02462 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC22.63■■□□□ 1.21
COL4A1P02462 SLC25A1P1-201ENST00000528351 927 ntBASIC22.63■■□□□ 1.21
COL4A1P02462 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC22.63■■□□□ 1.21
COL4A1P02462 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
COL4A1P02462 CALM3-211ENST00000598871 561 ntTSL 4 BASIC22.63■■□□□ 1.21
COL4A1P02462 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
COL4A1P02462 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
COL4A1P02462 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL4A1P02462 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.62■■□□□ 1.21
COL4A1P02462 AC116562.4-201ENST00000641316 2276 ntBASIC22.62■■□□□ 1.21
COL4A1P02462 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
COL4A1P02462 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 MIR149-201ENST00000384879 89 ntBASIC22.62■■□□□ 1.21
COL4A1P02462 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 AP000593.1-201ENST00000393668 712 ntBASIC22.62■■□□□ 1.21
COL4A1P02462 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.62■■□□□ 1.21
COL4A1P02462 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.62■■□□□ 1.21
COL4A1P02462 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC22.62■■□□□ 1.21
COL4A1P02462 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
COL4A1P02462 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
COL4A1P02462 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC22.62■■□□□ 1.21
COL4A1P02462 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC22.62■■□□□ 1.21
COL4A1P02462 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.62■■□□□ 1.21
COL4A1P02462 GUSBP12-201ENST00000513727 720 ntBASIC22.62■■□□□ 1.21
COL4A1P02462 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL4A1P02462 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
COL4A1P02462 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.61■■□□□ 1.21
COL4A1P02462 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.61■■□□□ 1.21
COL4A1P02462 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL4A1P02462 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms