Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.94■□□□□ 0.46
LDLRP01130 NAPSB-206ENST00000562112 1266 ntBASIC17.94■□□□□ 0.46
LDLRP01130 AC087388.1-201ENST00000571370 1112 ntBASIC17.94■□□□□ 0.46
LDLRP01130 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.93■□□□□ 0.46
LDLRP01130 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
LDLRP01130 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LDLRP01130 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
LDLRP01130 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.93■□□□□ 0.46
LDLRP01130 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.93■□□□□ 0.46
LDLRP01130 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.93■□□□□ 0.46
LDLRP01130 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.93■□□□□ 0.46
LDLRP01130 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LDLRP01130 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.93■□□□□ 0.46
LDLRP01130 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.93■□□□□ 0.46
LDLRP01130 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LDLRP01130 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDLRP01130 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LDLRP01130 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LDLRP01130 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LDLRP01130 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.92■□□□□ 0.46
LDLRP01130 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LDLRP01130 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.92■□□□□ 0.46
LDLRP01130 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.92■□□□□ 0.46
LDLRP01130 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.92■□□□□ 0.46
LDLRP01130 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.92■□□□□ 0.46
LDLRP01130 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LDLRP01130 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.92■□□□□ 0.46
LDLRP01130 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.92■□□□□ 0.46
LDLRP01130 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LDLRP01130 ANO7L1-203ENST00000602586 1720 ntBASIC17.92■□□□□ 0.46
LDLRP01130 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LDLRP01130 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDLRP01130 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LDLRP01130 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.91■□□□□ 0.46
LDLRP01130 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LDLRP01130 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.91■□□□□ 0.46
LDLRP01130 NBPF21P-201ENST00000425093 1451 ntBASIC17.91■□□□□ 0.46
LDLRP01130 SLC25A3P1-201ENST00000443844 931 ntBASIC17.91■□□□□ 0.46
LDLRP01130 AC104076.2-201ENST00000448912 469 ntBASIC17.91■□□□□ 0.46
LDLRP01130 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.91■□□□□ 0.46
LDLRP01130 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.91■□□□□ 0.46
LDLRP01130 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.91■□□□□ 0.46
LDLRP01130 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LDLRP01130 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDLRP01130 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms