Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDNEP1O95476 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CTDNEP1O95476 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CTDNEP1O95476 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CTDNEP1O95476 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDNEP1O95476 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
CTDNEP1O95476 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDNEP1O95476 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CTDNEP1O95476 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.47■■□□□ 1.03
CTDNEP1O95476 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDNEP1O95476 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.47■■□□□ 1.03
CTDNEP1O95476 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.46■■□□□ 1.03
CTDNEP1O95476 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CTDNEP1O95476 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 AC087499.1-201ENST00000418141 1075 ntBASIC21.45■■□□□ 1.02
CTDNEP1O95476 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.45■■□□□ 1.02
CTDNEP1O95476 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CTDNEP1O95476 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms