Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH4O15457 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
MSH4O15457 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.81■□□□□ 0.92
MSH4O15457 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
MSH4O15457 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
MSH4O15457 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH4O15457 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 MIR149-201ENST00000384879 89 ntBASIC20.8■□□□□ 0.92
MSH4O15457 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.8■□□□□ 0.92
MSH4O15457 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.8■□□□□ 0.92
MSH4O15457 AL136038.3-201ENST00000561909 1096 ntBASIC20.8■□□□□ 0.92
MSH4O15457 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
MSH4O15457 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
MSH4O15457 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.8■□□□□ 0.92
MSH4O15457 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 SDHAP2-201ENST00000455183 2001 ntBASIC20.8■□□□□ 0.92
MSH4O15457 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH4O15457 AC005332.1-201ENST00000577698 1310 ntBASIC20.79■□□□□ 0.92
MSH4O15457 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.79■□□□□ 0.92
MSH4O15457 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.79■□□□□ 0.92
MSH4O15457 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 AC009065.1-201ENST00000564055 1225 ntBASIC20.79■□□□□ 0.92
MSH4O15457 AL358472.4-201ENST00000633140 710 ntBASIC20.79■□□□□ 0.92
MSH4O15457 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
MSH4O15457 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH4O15457 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH4O15457 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MSH4O15457 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
MSH4O15457 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 AC009102.3-201ENST00000623118 1491 ntBASIC20.78■□□□□ 0.92
MSH4O15457 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH4O15457 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH4O15457 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH4O15457 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MSH4O15457 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.78■□□□□ 0.92
MSH4O15457 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH4O15457 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
MSH4O15457 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH4O15457 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH4O15457 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
MSH4O15457 PCED1CP-201ENST00000419887 785 ntBASIC20.77■□□□□ 0.92
MSH4O15457 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.77■□□□□ 0.92
MSH4O15457 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.77■□□□□ 0.92
MSH4O15457 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.77■□□□□ 0.92
MSH4O15457 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
MSH4O15457 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH4O15457 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.77■□□□□ 0.91
MSH4O15457 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
MSH4O15457 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
MSH4O15457 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
MSH4O15457 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.76■□□□□ 0.91
MSH4O15457 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
MSH4O15457 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.76■□□□□ 0.91
MSH4O15457 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
MSH4O15457 MIR662-201ENST00000384847 95 ntBASIC20.76■□□□□ 0.91
MSH4O15457 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms