Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SDCBPO00560 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SDCBPO00560 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.8■□□□□ 0.12
SDCBPO00560 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.8■□□□□ 0.12
SDCBPO00560 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 POU5F1P3-201ENST00000428824 1078 ntBASIC15.8■□□□□ 0.12
SDCBPO00560 TSPY21P-201ENST00000433481 731 ntBASIC15.8■□□□□ 0.12
SDCBPO00560 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.8■□□□□ 0.12
SDCBPO00560 AC128676.1-201ENST00000454392 318 ntBASIC15.8■□□□□ 0.12
SDCBPO00560 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.8■□□□□ 0.12
SDCBPO00560 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.8■□□□□ 0.12
SDCBPO00560 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SDCBPO00560 AL499627.1-201ENST00000569373 2188 ntBASIC15.8■□□□□ 0.12
SDCBPO00560 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.8■□□□□ 0.12
SDCBPO00560 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SDCBPO00560 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.8■□□□□ 0.12
SDCBPO00560 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.8■□□□□ 0.12
SDCBPO00560 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
SDCBPO00560 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 AC012313.1-201ENST00000593393 3059 ntBASIC15.79■□□□□ 0.12
SDCBPO00560 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.79■□□□□ 0.12
SDCBPO00560 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.79■□□□□ 0.12
SDCBPO00560 AC133681.1-201ENST00000465482 601 ntBASIC15.79■□□□□ 0.12
SDCBPO00560 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 C1QBPP2-201ENST00000528754 825 ntBASIC15.79■□□□□ 0.12
SDCBPO00560 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.79■□□□□ 0.12
SDCBPO00560 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SDCBPO00560 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SDCBPO00560 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
SDCBPO00560 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SDCBPO00560 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
SDCBPO00560 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SDCBPO00560 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.78■□□□□ 0.12
SDCBPO00560 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms