Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TCRBV7S3A2A0A539 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TCRBV7S3A2A0A539 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TCRBV7S3A2A0A539 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TCRBV7S3A2A0A539 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 MIR564-202ENST00000385049 94 ntBASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 NUDT16P1-203ENST00000513809 620 ntBASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 AC142381.4-202ENST00000563973 229 ntBASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 SLC25A1P4-201ENST00000567977 778 ntBASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 REXO1L9P-201ENST00000604264 2108 ntBASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TCRBV7S3A2A0A539 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 AC113410.3-201ENST00000623366 203 ntBASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.87■□□□□ 0.61
TCRBV7S3A2A0A539 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 MIR4674-201ENST00000582457 87 ntBASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV7S3A2A0A539 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 RPS2P55-201ENST00000397318 883 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 GCSHP5-201ENST00000443090 522 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AL158047.1-201ENST00000445918 881 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AC107956.1-201ENST00000494359 873 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AC097488.1-201ENST00000507834 756 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 REXO1L10P-201ENST00000615707 1290 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 REXO1L12P-201ENST00000622156 912 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms