Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 AL355472.2-201ENST00000422958 438 ntBASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 AC096631.2-201ENST00000436136 790 ntBASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 GALNS-213ENST00000569433 723 ntTSL 3 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TRAV1-1A0A0B4J248 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 MYLKP1-201ENST00000509077 1580 ntBASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 GPX1P1-201ENST00000388829 606 ntBASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 AL357033.4-201ENST00000617703 1807 ntBASIC14.47□□□□□ -0.09
TRAV1-1A0A0B4J248 AL162727.3-201ENST00000635661 2787 ntBASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms