Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 SNHG9-202ENST00000564014 471 ntBASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 AC005829.1-201ENST00000570002 483 ntBASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC28.05■■■□□ 2.08
COL17A1Q9UMD9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 KRT18P2-201ENST00000447938 1258 ntBASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 AC105339.3-201ENST00000560043 636 ntBASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 AC064836.3-201ENST00000607928 673 ntBASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC28.04■■■□□ 2.08
COL17A1Q9UMD9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 AL096865.1-201ENST00000606796 927 ntBASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 AC107918.4-202ENST00000641623 219 ntBASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
COL17A1Q9UMD9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 AC006333.2-201ENST00000607957 2099 ntBASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC28.02■■■□□ 2.08
COL17A1Q9UMD9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.08
COL17A1Q9UMD9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 CNN2P11-201ENST00000429351 262 ntBASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
COL17A1Q9UMD9 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 DDT-206ENST00000430101 573 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 ABCD1P5-201ENST00000445663 754 ntBASIC28■■■□□ 2.07
COL17A1Q9UMD9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC28■■■□□ 2.07
COL17A1Q9UMD9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL17A1Q9UMD9 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms