Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 MIR3917-201ENST00000580971 93 ntBASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TM9SF3Q9HD45 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 AL136038.4-201ENST00000603606 1261 ntBASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.56■□□□□ 0.56
TM9SF3Q9HD45 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 KRT8P26-201ENST00000534154 1276 ntBASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 AC093525.10-201ENST00000625130 1569 ntBASIC18.55■□□□□ 0.56
TM9SF3Q9HD45 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 AL391807.1-203ENST00000604392 2365 ntBASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 AP002414.4-201ENST00000589764 1148 ntBASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.54■□□□□ 0.56
TM9SF3Q9HD45 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms