Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 KRT18P48-201ENST00000434763 852 ntBASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 KRT126P-201ENST00000549467 1181 ntBASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 NPAP1P7-201ENST00000613027 823 ntBASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 AL157888.1-201ENST00000631930 593 ntBASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAIPQ9BWF2 AL032819.2-201ENST00000624543 2162 ntBASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MIR3180-4-201ENST00000582223 153 ntBASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAIPQ9BWF2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 MIR662-201ENST00000384847 95 ntBASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 HCG4P8-203ENST00000443049 980 ntBASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 AC011498.5-201ENST00000592027 486 ntBASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAIPQ9BWF2 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 KRT18P23-201ENST00000435622 1283 ntBASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAIPQ9BWF2 AL391807.1-203ENST00000604392 2365 ntBASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms