Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.59■□□□□ 0.57
CPNE1Q99829 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.59■□□□□ 0.57
CPNE1Q99829 AP000692.2-201ENST00000608391 879 ntBASIC18.59■□□□□ 0.57
CPNE1Q99829 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.59■□□□□ 0.57
CPNE1Q99829 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
CPNE1Q99829 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CPNE1Q99829 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.59■□□□□ 0.57
CPNE1Q99829 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPNE1Q99829 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 FSCN1P1-201ENST00000568912 1481 ntBASIC18.58■□□□□ 0.57
CPNE1Q99829 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 AC008764.6-201ENST00000595909 2069 ntBASIC18.58■□□□□ 0.57
CPNE1Q99829 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CPNE1Q99829 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CPNE1Q99829 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CPNE1Q99829 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPNE1Q99829 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CPNE1Q99829 CD99P1-205ENST00000527459 561 ntBASIC18.58■□□□□ 0.56
CPNE1Q99829 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.58■□□□□ 0.56
CPNE1Q99829 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.58■□□□□ 0.56
CPNE1Q99829 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CPNE1Q99829 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPNE1Q99829 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPNE1Q99829 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
CPNE1Q99829 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CPNE1Q99829 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPNE1Q99829 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.58■□□□□ 0.56
CPNE1Q99829 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CPNE1Q99829 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CPNE1Q99829 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.57■□□□□ 0.56
CPNE1Q99829 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 MIR4651-201ENST00000582622 73 ntBASIC18.57■□□□□ 0.56
CPNE1Q99829 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.57■□□□□ 0.56
CPNE1Q99829 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.57■□□□□ 0.56
CPNE1Q99829 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CPNE1Q99829 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.56■□□□□ 0.56
CPNE1Q99829 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.56■□□□□ 0.56
CPNE1Q99829 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CPNE1Q99829 MESTP1-201ENST00000404287 994 ntBASIC18.56■□□□□ 0.56
CPNE1Q99829 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CPNE1Q99829 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.56■□□□□ 0.56
CPNE1Q99829 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.56■□□□□ 0.56
CPNE1Q99829 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.56■□□□□ 0.56
CPNE1Q99829 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.56■□□□□ 0.56
CPNE1Q99829 AC008622.2-201ENST00000617006 1229 ntBASIC18.56■□□□□ 0.56
CPNE1Q99829 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
CPNE1Q99829 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.56■□□□□ 0.56
CPNE1Q99829 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CPNE1Q99829 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms