Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TRMT2A-218ENST00000492988 854 ntTSL 520.89■□□□□ 0.931e-10■□□□□ 11
DDX55Q8NHQ9 TRMT2A-220ENST00000494820 1098 ntTSL 519.58■□□□□ 0.721e-10■□□□□ 11
DDX55Q8NHQ9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.041e-9■□□□□ 11
DDX55Q8NHQ9 SSR2-217ENST00000531917 555 ntTSL 518.19■□□□□ 0.56e-6■□□□□ 11
DDX55Q8NHQ9 SSR2-206ENST00000472898 711 ntTSL 212.49□□□□□ -0.416e-6■□□□□ 11
DDX55Q8NHQ9 SSR2-203ENST00000466905 666 ntTSL 510.88□□□□□ -0.676e-6■□□□□ 11
DDX55Q8NHQ9 SSR2-208ENST00000474377 639 ntTSL 510.63□□□□□ -0.716e-6■□□□□ 11
DDX55Q8NHQ9 SSR2-202ENST00000368311 5166 ntTSL 1 (best)8.98□□□□□ -0.976e-6■□□□□ 11
DDX55Q8NHQ9 TGFBI-202ENST00000503087 399 ntTSL 35.3□□□□□ -1.566e-7■□□□□ 11
DDX55Q8NHQ9 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.175e-10■□□□□ 10.9
DDX55Q8NHQ9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.662e-6■□□□□ 10.9
DDX55Q8NHQ9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.66■■■□□ 2.662e-6■□□□□ 10.9
DDX55Q8NHQ9 NUP214-207ENST00000476004 502 ntTSL 318.83■□□□□ 0.62e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-219ENST00000528406 393 ntTSL 316.51■□□□□ 0.232e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC12.4□□□□□ -0.422e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-204ENST00000453861 3208 ntTSL 510.38□□□□□ -0.752e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.912e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC9.12□□□□□ -0.952e-22■□□□□ 10.9
DDX55Q8NHQ9 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.12e-22■□□□□ 10.9
DDX55Q8NHQ9 DDB1-224ENST00000545894 2282 ntTSL 212.51□□□□□ -0.413e-20■□□□□ 10.9
DDX55Q8NHQ9 RPS9-213ENST00000626547 476 ntTSL 2 BASIC15.41■□□□□ 0.062e-20■□□□□ 10.9
DDX55Q8NHQ9 MLST8-206ENST00000562239 597 ntTSL 213.23□□□□□ -0.291e-6■□□□□ 10.9
DDX55Q8NHQ9 GSK3A-203ENST00000453535 1897 ntTSL 531.64■■■□□ 2.661e-6■□□□□ 10.9
DDX55Q8NHQ9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.971e-6■□□□□ 10.9
DDX55Q8NHQ9 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.881e-6■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC33.56■■■□□ 2.961e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.38■■■□□ 2.611e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.79■■■□□ 2.21e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-218ENST00000576343 1006 ntTSL 528.13■■■□□ 2.091e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.13■■□□□ 1.771e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.771e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.52■■□□□ 1.521e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-217ENST00000574343 693 ntTSL 220.74■□□□□ 0.911e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-212ENST00000572995 804 ntTSL 318.85■□□□□ 0.611e-8■□□□□ 10.9
DDX55Q8NHQ9 PCYT2-211ENST00000572924 732 ntTSL 218.21■□□□□ 0.511e-8■□□□□ 10.9
DDX55Q8NHQ9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.2■□□□□ 0.341e-8■□□□□ 10.9
DDX55Q8NHQ9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.62■□□□□ 0.091e-8■□□□□ 10.9
DDX55Q8NHQ9 STK24-201ENST00000376547 2492 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.051e-8■□□□□ 10.9
DDX55Q8NHQ9 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.341e-8■□□□□ 10.9
DDX55Q8NHQ9 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.41e-8■□□□□ 10.9
DDX55Q8NHQ9 TRIM28-208ENST00000597172 577 ntTSL 211.26□□□□□ -0.611e-8■□□□□ 10.9
DDX55Q8NHQ9 STK24-202ENST00000376554 3602 ntTSL 511.04□□□□□ -0.641e-8■□□□□ 10.9
DDX55Q8NHQ9 MAN2A1-203ENST00000503970 5599 ntTSL 23.59□□□□□ -1.841e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.583e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC29.96■■■□□ 2.393e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-217ENST00000540382 1677 ntTSL 529.89■■■□□ 2.383e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-219ENST00000542099 1119 ntTSL 329.23■■■□□ 2.273e-10■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-218ENST00000540708 1782 ntTSL 228.02■■■□□ 2.083e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-209ENST00000442210 716 ntTSL 327.71■■■□□ 2.033e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.953e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-216ENST00000539770 1295 ntTSL 1 (best)27.19■■□□□ 1.943e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.823e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-214ENST00000536502 1273 ntTSL 225.75■■□□□ 1.713e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.713e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.47■■□□□ 1.673e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.433e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-203ENST00000392433 1370 ntTSL 221.9■■□□□ 1.13e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-215ENST00000539576 1684 ntTSL 521.88■■□□□ 1.093e-8■□□□□ 10.9
DDX55Q8NHQ9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.41■■□□□ 1.023e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-212ENST00000456762 796 ntAPPRIS ALT2 TSL 221.07■□□□□ 0.963e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.73e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-206ENST00000413381 799 ntAPPRIS ALT2 TSL 515.99■□□□□ 0.153e-8■□□□□ 10.9
DDX55Q8NHQ9 ARL6IP4-202ENST00000357866 546 ntTSL 1 (best) BASIC13.54□□□□□ -0.243e-8■□□□□ 10.9
DDX55Q8NHQ9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.245e-7■□□□□ 10.9
DDX55Q8NHQ9 TINAGL1-204ENST00000463112 3075 ntTSL 217.89■□□□□ 0.455e-7■□□□□ 10.9
DDX55Q8NHQ9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.681e-9■□□□□ 10.9
DDX55Q8NHQ9 SERINC2-204ENST00000491976 2807 ntTSL 217.76■□□□□ 0.431e-9■□□□□ 10.9
DDX55Q8NHQ9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.66■□□□□ 0.421e-9■□□□□ 10.9
DDX55Q8NHQ9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.44■□□□□ 0.381e-9■□□□□ 10.9
DDX55Q8NHQ9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.69■□□□□ 0.261e-9■□□□□ 10.9
DDX55Q8NHQ9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.681e-15■□□□□ 10.9
DDX55Q8NHQ9 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.271e-15■□□□□ 10.9
DDX55Q8NHQ9 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.31e-15■□□□□ 10.9
DDX55Q8NHQ9 FKBP8-204ENST00000596015 612 ntTSL 320.51■□□□□ 0.879e-13■□□□□ 10.9
DDX55Q8NHQ9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.56■■□□□ 1.366e-11■□□□□ 10.9
DDX55Q8NHQ9 NT5DC2-206ENST00000466112 887 ntTSL 220.95■□□□□ 0.941e-7■□□□□ 10.9
DDX55Q8NHQ9 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.21■□□□□ 0.183e-7■□□□□ 10.9
DDX55Q8NHQ9 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.083e-7■□□□□ 10.9
DDX55Q8NHQ9 HEXA-211ENST00000567411 1743 ntTSL 514.85□□□□□ -0.033e-7■□□□□ 10.9
DDX55Q8NHQ9 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.143e-7■□□□□ 10.9
DDX55Q8NHQ9 ANKRD9-203ENST00000559404 1502 ntTSL 229.72■■■□□ 2.353e-7■□□□□ 10.9
DDX55Q8NHQ9 ARFGAP1-214ENST00000520485 1548 ntTSL 227.06■■□□□ 1.923e-7■□□□□ 10.9
DDX55Q8NHQ9 ANKRD9-202ENST00000557902 620 ntTSL 326.9■■□□□ 1.93e-7■□□□□ 10.9
DDX55Q8NHQ9 HGS-215ENST00000576393 922 ntTSL 225.82■■□□□ 1.723e-7■□□□□ 10.9
DDX55Q8NHQ9 HGS-205ENST00000571518 644 ntTSL 225.15■■□□□ 1.623e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-210ENST00000438091 1208 ntTSL 524.87■■□□□ 1.573e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-213ENST00000451231 2163 ntTSL 223.41■■□□□ 1.343e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-209ENST00000436503 1445 ntTSL 1 (best)23.33■■□□□ 1.333e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.273e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.153e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-230ENST00000498214 2346 ntTSL 222.01■■□□□ 1.113e-7■□□□□ 10.9
DDX55Q8NHQ9 ARFGAP1-207ENST00000518618 1244 ntTSL 222■■□□□ 1.113e-7■□□□□ 10.9
DDX55Q8NHQ9 HGS-216ENST00000576498 1004 ntTSL 221.98■■□□□ 1.113e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-214ENST00000451271 2284 ntTSL 1 (best)21.92■■□□□ 1.13e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-204ENST00000412901 1354 ntTSL 221.59■■□□□ 1.053e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.023e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-217ENST00000464406 807 ntTSL 221.32■■□□□ 13e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-212ENST00000451165 1053 ntTSL 221.1■□□□□ 0.973e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-222ENST00000476810 1044 ntTSL 521.1■□□□□ 0.973e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-226ENST00000490512 1059 ntTSL 221.1■□□□□ 0.973e-7■□□□□ 10.9
Retrieved 100 of 15,504 protein–RNA pairs in 120.6 ms