Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 IL11-204ENST00000590625 1028 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AL691432.3-201ENST00000621860 400 ntBASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CA15P1-201ENST00000481698 905 ntBASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 FDX1P1-201ENST00000449115 551 ntBASIC5.73□□□□□ -1.49
SYNE1Q8NF91 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AL732292.2-201ENST00000609649 430 ntBASIC5.73□□□□□ -1.49
SYNE1Q8NF91 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SYNE1Q8NF91 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms