Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PPP4R4Q6NUP7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 KRASP1-201ENST00000407852 552 ntBASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 AL121906.2-201ENST00000621597 723 ntBASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PPP4R4Q6NUP7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 LINC00896-202ENST00000609602 2128 ntBASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 RPPH1-201ENST00000516869 333 ntBASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 AC083906.6-201ENST00000641366 219 ntBASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 SDHAP1-207ENST00000440850 2000 ntBASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PPP4R4Q6NUP7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 FEM1AP3-201ENST00000403722 1741 ntBASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.79■□□□□ 0.44
PPP4R4Q6NUP7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms