Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 AL662799.1-202ENST00000614205 422 ntBASIC10.12□□□□□ -0.79
UBR4Q5T4S7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
UBR4Q5T4S7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC073621.1-201ENST00000392730 636 ntBASIC10.11□□□□□ -0.79
UBR4Q5T4S7 ACTG1P14-201ENST00000446382 1122 ntBASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AL589182.2-201ENST00000619332 1049 ntBASIC10.11□□□□□ -0.79
UBR4Q5T4S7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 GATB-205ENST00000508611 605 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC091812.2-201ENST00000619081 385 ntBASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 ACA64.2-201ENST00000459014 129 ntBASIC10.11□□□□□ -0.79
UBR4Q5T4S7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC10.11□□□□□ -0.79
UBR4Q5T4S7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 C9orf163-202ENST00000624034 2573 ntBASIC10.1□□□□□ -0.79
UBR4Q5T4S7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 TUBB3P1-201ENST00000405796 1332 ntBASIC10.1□□□□□ -0.79
UBR4Q5T4S7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 FAM86MP-201ENST00000340703 885 ntBASIC10.1□□□□□ -0.79
UBR4Q5T4S7 AC253536.4-201ENST00000440539 267 ntBASIC10.1□□□□□ -0.79
UBR4Q5T4S7 VN2R19P-201ENST00000442399 1052 ntBASIC10.1□□□□□ -0.79
UBR4Q5T4S7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC10.1□□□□□ -0.79
UBR4Q5T4S7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms