Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP39Q53GS9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.86■□□□□ 0.61
USP39Q53GS9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.86■□□□□ 0.61
USP39Q53GS9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.86■□□□□ 0.61
USP39Q53GS9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USP39Q53GS9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 SEC1P-202ENST00000473944 940 ntBASIC18.85■□□□□ 0.61
USP39Q53GS9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.85■□□□□ 0.61
USP39Q53GS9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.85■□□□□ 0.61
USP39Q53GS9 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.85■□□□□ 0.61
USP39Q53GS9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.85■□□□□ 0.61
USP39Q53GS9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USP39Q53GS9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USP39Q53GS9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP39Q53GS9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
USP39Q53GS9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.84■□□□□ 0.61
USP39Q53GS9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.84■□□□□ 0.61
USP39Q53GS9 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
USP39Q53GS9 TSPY22P-201ENST00000427496 604 ntBASIC18.84■□□□□ 0.61
USP39Q53GS9 HLA-F-220ENST00000434407 884 ntBASIC18.84■□□□□ 0.61
USP39Q53GS9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.84■□□□□ 0.61
USP39Q53GS9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.84■□□□□ 0.61
USP39Q53GS9 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.84■□□□□ 0.61
USP39Q53GS9 AL136038.4-201ENST00000603606 1261 ntBASIC18.84■□□□□ 0.61
USP39Q53GS9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.84■□□□□ 0.61
USP39Q53GS9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USP39Q53GS9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.84■□□□□ 0.61
USP39Q53GS9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP39Q53GS9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
USP39Q53GS9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.83■□□□□ 0.61
USP39Q53GS9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
USP39Q53GS9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
USP39Q53GS9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.83■□□□□ 0.61
USP39Q53GS9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP39Q53GS9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USP39Q53GS9 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP39Q53GS9 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.83■□□□□ 0.6
USP39Q53GS9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.83■□□□□ 0.6
USP39Q53GS9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.83■□□□□ 0.6
USP39Q53GS9 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP39Q53GS9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.83■□□□□ 0.6
USP39Q53GS9 AL121772.3-201ENST00000610840 674 ntBASIC18.83■□□□□ 0.6
USP39Q53GS9 AC079602.3-201ENST00000623931 403 ntBASIC18.83■□□□□ 0.6
USP39Q53GS9 AL157888.1-201ENST00000631930 593 ntBASIC18.83■□□□□ 0.6
USP39Q53GS9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
USP39Q53GS9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP39Q53GS9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.83■□□□□ 0.6
USP39Q53GS9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.83■□□□□ 0.6
USP39Q53GS9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.83■□□□□ 0.6
USP39Q53GS9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP39Q53GS9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms