Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.3■■□□□ 1.48
RIPK4P57078 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RIPK4P57078 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RIPK4P57078 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
RIPK4P57078 AL163051.1-201ENST00000569214 1512 ntBASIC24.3■■□□□ 1.48
RIPK4P57078 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RIPK4P57078 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RIPK4P57078 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC24.29■■□□□ 1.48
RIPK4P57078 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC24.29■■□□□ 1.48
RIPK4P57078 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RIPK4P57078 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
RIPK4P57078 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC24.29■■□□□ 1.48
RIPK4P57078 SPDYE13P-201ENST00000445314 798 ntBASIC24.29■■□□□ 1.48
RIPK4P57078 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC24.29■■□□□ 1.48
RIPK4P57078 MIR3180-4-201ENST00000582223 153 ntBASIC24.29■■□□□ 1.48
RIPK4P57078 USF2-205ENST00000594064 1179 ntTSL 2 BASIC24.29■■□□□ 1.48
RIPK4P57078 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RIPK4P57078 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC24.29■■□□□ 1.48
RIPK4P57078 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC24.29■■□□□ 1.48
RIPK4P57078 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RIPK4P57078 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.29■■□□□ 1.48
RIPK4P57078 MYLKP1-201ENST00000509077 1580 ntBASIC24.29■■□□□ 1.48
RIPK4P57078 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
RIPK4P57078 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC24.28■■□□□ 1.48
RIPK4P57078 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.28■■□□□ 1.48
RIPK4P57078 RNF146-204ENST00000476956 884 ntTSL 2 BASIC24.28■■□□□ 1.48
RIPK4P57078 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC24.28■■□□□ 1.48
RIPK4P57078 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.28■■□□□ 1.48
RIPK4P57078 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.28■■□□□ 1.48
RIPK4P57078 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
RIPK4P57078 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC24.27■■□□□ 1.48
RIPK4P57078 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC24.27■■□□□ 1.48
RIPK4P57078 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC24.27■■□□□ 1.48
RIPK4P57078 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 AC005082.1-201ENST00000413042 2259 ntBASIC24.27■■□□□ 1.48
RIPK4P57078 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC24.27■■□□□ 1.48
RIPK4P57078 FAM86EP-206ENST00000510506 987 ntBASIC24.27■■□□□ 1.48
RIPK4P57078 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.27■■□□□ 1.48
RIPK4P57078 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.27■■□□□ 1.48
RIPK4P57078 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.27■■□□□ 1.48
RIPK4P57078 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.27■■□□□ 1.48
RIPK4P57078 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
RIPK4P57078 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC24.27■■□□□ 1.48
RIPK4P57078 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RIPK4P57078 AL391807.1-203ENST00000604392 2365 ntBASIC24.27■■□□□ 1.48
RIPK4P57078 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 ZNF444P1-201ENST00000559497 298 ntBASIC24.26■■□□□ 1.47
RIPK4P57078 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC24.26■■□□□ 1.47
RIPK4P57078 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.26■■□□□ 1.47
RIPK4P57078 AL121956.5-201ENST00000625261 221 ntBASIC24.26■■□□□ 1.47
RIPK4P57078 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 MCC-208ENST00000514701 2855 ntTSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC24.26■■□□□ 1.47
RIPK4P57078 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RIPK4P57078 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RIPK4P57078 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RIPK4P57078 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC24.25■■□□□ 1.47
RIPK4P57078 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RIPK4P57078 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC24.25■■□□□ 1.47
RIPK4P57078 HLA-F-220ENST00000434407 884 ntBASIC24.25■■□□□ 1.47
RIPK4P57078 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.25■■□□□ 1.47
RIPK4P57078 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.25■■□□□ 1.47
RIPK4P57078 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
RIPK4P57078 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RIPK4P57078 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms