Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.88■□□□□ 0.77
VCPP55072 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.88■□□□□ 0.77
VCPP55072 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VCPP55072 AC009078.2-202ENST00000463353 338 ntBASIC19.88■□□□□ 0.77
VCPP55072 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.88■□□□□ 0.77
VCPP55072 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.88■□□□□ 0.77
VCPP55072 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.88■□□□□ 0.77
VCPP55072 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.88■□□□□ 0.77
VCPP55072 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
VCPP55072 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.88■□□□□ 0.77
VCPP55072 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.88■□□□□ 0.77
VCPP55072 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCPP55072 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.87■□□□□ 0.77
VCPP55072 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VCPP55072 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 FAAHP1-202ENST00000446499 1238 ntBASIC19.87■□□□□ 0.77
VCPP55072 TSPY17P-201ENST00000450329 467 ntBASIC19.87■□□□□ 0.77
VCPP55072 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.87■□□□□ 0.77
VCPP55072 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VCPP55072 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.87■□□□□ 0.77
VCPP55072 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.87■□□□□ 0.77
VCPP55072 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VCPP55072 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.86■□□□□ 0.77
VCPP55072 AL353719.1-201ENST00000566847 864 ntBASIC19.86■□□□□ 0.77
VCPP55072 HYMAI.1-201ENST00000620949 238 ntBASIC19.86■□□□□ 0.77
VCPP55072 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 FP475955.4-201ENST00000623131 1990 ntBASIC19.86■□□□□ 0.77
VCPP55072 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VCPP55072 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCPP55072 IRX1P1-201ENST00000438849 1838 ntBASIC19.86■□□□□ 0.77
VCPP55072 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
VCPP55072 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.85■□□□□ 0.77
VCPP55072 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.85■□□□□ 0.77
VCPP55072 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.85■□□□□ 0.77
VCPP55072 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.85■□□□□ 0.77
VCPP55072 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.85■□□□□ 0.77
VCPP55072 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.85■□□□□ 0.77
VCPP55072 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.85■□□□□ 0.77
VCPP55072 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCPP55072 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.85■□□□□ 0.77
VCPP55072 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VCPP55072 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms