Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.15■□□□□ 0.66
NEK3P51956 AL049597.2-201ENST00000565575 961 ntBASIC19.15■□□□□ 0.66
NEK3P51956 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 NOC2LP1-202ENST00000452600 2235 ntBASIC19.15■□□□□ 0.66
NEK3P51956 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NEK3P51956 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.14■□□□□ 0.66
NEK3P51956 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
NEK3P51956 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.14■□□□□ 0.65
NEK3P51956 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.14■□□□□ 0.65
NEK3P51956 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.14■□□□□ 0.65
NEK3P51956 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.14■□□□□ 0.65
NEK3P51956 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NEK3P51956 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
NEK3P51956 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.14■□□□□ 0.65
NEK3P51956 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
NEK3P51956 AL512604.3-201ENST00000569583 964 ntBASIC19.13■□□□□ 0.65
NEK3P51956 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
NEK3P51956 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
NEK3P51956 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
NEK3P51956 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
NEK3P51956 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.12■□□□□ 0.65
NEK3P51956 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
NEK3P51956 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NEK3P51956 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.12■□□□□ 0.65
NEK3P51956 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NEK3P51956 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
NEK3P51956 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.12■□□□□ 0.65
NEK3P51956 BX664615.1-201ENST00000443558 458 ntBASIC19.12■□□□□ 0.65
NEK3P51956 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
NEK3P51956 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.12■□□□□ 0.65
NEK3P51956 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
NEK3P51956 AP003041.3-201ENST00000527151 707 ntBASIC19.12■□□□□ 0.65
NEK3P51956 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.12■□□□□ 0.65
NEK3P51956 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.12■□□□□ 0.65
NEK3P51956 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.12■□□□□ 0.65
NEK3P51956 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
NEK3P51956 AC018470.1-201ENST00000624790 3129 ntBASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms