Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.31■□□□□ 0.68
PTPN9P43378 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.31■□□□□ 0.68
PTPN9P43378 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.31■□□□□ 0.68
PTPN9P43378 MIR3180-4-201ENST00000582223 153 ntBASIC19.31■□□□□ 0.68
PTPN9P43378 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 AC141257.4-201ENST00000634557 245 ntBASIC19.31■□□□□ 0.68
PTPN9P43378 AC136944.6-201ENST00000634818 245 ntBASIC19.31■□□□□ 0.68
PTPN9P43378 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PTPN9P43378 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.31■□□□□ 0.68
PTPN9P43378 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.31■□□□□ 0.68
PTPN9P43378 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PTPN9P43378 AL163051.1-201ENST00000569214 1512 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.3■□□□□ 0.68
PTPN9P43378 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.3■□□□□ 0.68
PTPN9P43378 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.3■□□□□ 0.68
PTPN9P43378 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 AP000523.1-201ENST00000398242 1049 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 AC113347.1-201ENST00000413321 391 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 AC211429.1-201ENST00000415277 523 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 SEC1P-202ENST00000473944 940 ntBASIC19.3■□□□□ 0.68
PTPN9P43378 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PTPN9P43378 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PTPN9P43378 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.3■□□□□ 0.68
PTPN9P43378 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PTPN9P43378 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PTPN9P43378 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN9P43378 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.29■□□□□ 0.68
PTPN9P43378 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.29■□□□□ 0.68
PTPN9P43378 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN9P43378 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.29■□□□□ 0.68
PTPN9P43378 AC010203.1-204ENST00000548782 407 ntBASIC19.29■□□□□ 0.68
PTPN9P43378 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.29■□□□□ 0.68
PTPN9P43378 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN9P43378 AC005363.2-201ENST00000618631 242 ntBASIC19.29■□□□□ 0.68
PTPN9P43378 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.29■□□□□ 0.68
PTPN9P43378 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.29■□□□□ 0.68
PTPN9P43378 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN9P43378 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PTPN9P43378 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.29■□□□□ 0.68
PTPN9P43378 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTPN9P43378 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.28■□□□□ 0.68
PTPN9P43378 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PTPN9P43378 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PTPN9P43378 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PTPN9P43378 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.28■□□□□ 0.68
PTPN9P43378 MIR149-201ENST00000384879 89 ntBASIC19.28■□□□□ 0.68
PTPN9P43378 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
PTPN9P43378 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.28■□□□□ 0.68
PTPN9P43378 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms