Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 NIFKP9-201ENST00000419265 221 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 AC091390.4-202ENST00000476426 537 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 Z99916.2-201ENST00000604037 246 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 AC073592.3-201ENST00000625118 1834 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 AP002982.1-201ENST00000492365 877 ntBASIC14.17□□□□□ -0.14
HLA-DMBP28068 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 AC079598.2-202ENST00000546624 1451 ntBASIC14.17□□□□□ -0.14
HLA-DMBP28068 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HLA-DMBP28068 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
HLA-DMBP28068 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 PCDHB18P-201ENST00000524813 2368 ntBASIC14.16□□□□□ -0.14
HLA-DMBP28068 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ABALON-201ENST00000629058 1903 ntBASIC14.16□□□□□ -0.14
HLA-DMBP28068 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
HLA-DMBP28068 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HLA-DMBP28068 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms